Index

_

__init__() (ComponentSelector method) (CustomEncoder method) (InputHarvester method) (OutputGenerator method)

A

accepted_comps_ (ComponentSelector property) add_decomp_prefix() (in module tedana.io) add_df_to_file() (OutputGenerator method) add_manual() (ComponentSelector method)

andb() (in module tedana.utils) are_all_components_accepted_or_rejected() (ComponentSelector method) are_only_necessary_metrics_used() (ComponentSelector method) automatic_selection() (in module tedana.selection.tedica)

B

build_fstat_regressor_models() (in module tedana.metrics.external)

C

calc_extend_factor() (in module tedana.selection.selection_nodes) calc_kappa_elbow() (in module tedana.selection.selection_nodes) calc_max_good_meanmetricrank() (in module tedana.selection.selection_nodes) calc_median() (in module tedana.selection.selection_nodes) calc_revised_meanmetricrank_guesses() (in module tedana.selection.selection_nodes) calc_rho_elbow() (in module tedana.selection.selection_nodes) calc_varex_kappa_ratio() (in module tedana.selection.selection_nodes) calc_varex_thresh() (in module tedana.selection.selection_nodes) calculate_betas() (in module tedana.metrics.dependence) calculate_dependence_metrics() (in module tedana.metrics.dependence) calculate_f_maps() (in module tedana.metrics.dependence) calculate_psc() (in module tedana.metrics.dependence) calculate_rejected_components_impact() (in module tedana.reporting.quality_metrics) calculate_varex() (in module tedana.metrics.dependence) calculate_varex_norm() (in module tedana.metrics.dependence)

calculate_weights() (in module tedana.metrics.dependence) calculate_z_maps() (in module tedana.metrics.dependence) change_comptable_classifications() (in module tedana.selection.selection_utils) check_null() (ComponentSelector method) clean_dataframe() (in module tedana.selection.selection_utils) comp_figures() (in module tedana.reporting.static_figures) ComponentSelector (class in tedana.selection.component_selector) comptable_classification_changer() (in module tedana.selection.selection_utils) compute_countnoise() (in module tedana.metrics.dependence) compute_countsignal() (in module tedana.metrics.dependence) compute_dice() (in module tedana.metrics.dependence) compute_signal_minus_noise_t() (in module tedana.metrics.dependence) compute_signal_minus_noise_z() (in module tedana.metrics.dependence) computefeats2() (in module tedana.stats) confirm_metrics_exist() (in module tedana.selection.selection_utils) CustomEncoder (class in tedana.io)

D

dec_classification_doesnt_exist() (in module tedana.selection.selection_nodes) dec_left_op_right() (in module tedana.selection.selection_nodes) dec_reclassify_high_var_comps() (in module tedana.selection.selection_nodes)

dec_variance_lessthan_thresholds() (in module tedana.selection.selection_nodes) default() (CustomEncoder method) denoise_ts() (in module tedana.io) dice() (in module tedana.utils)

E

encode() (CustomEncoder method)

F

find_braces() (in module tedana.bibtex) find_citations() (in module tedana.bibtex) fit_decay() (in module tedana.decay)

fit_decay_ts() (in module tedana.decay) fit_mixing_to_regressors() (in module tedana.metrics.external) fit_model_with_stats() (in module tedana.metrics.external) fit_regressors() (in module tedana.metrics.external)

G

generate_decision_table_score() (in module tedana.metrics.dependence) generate_metrics() (in module tedana.metrics.collect) generate_report() (in module tedana.reporting.html_report) get_coeffs() (in module tedana.stats) get_description_references() (in module tedana.bibtex) get_extend_factor() (in module tedana.selection.selection_utils) get_fields() (in module tedana.io) get_file_contents() (InputHarvester method)

get_file_path() (InputHarvester method) get_metadata() (in module tedana.metrics.collect) get_name() (OutputGenerator method) get_spectrum() (in module tedana.utils) getelbow() (in module tedana.selection.selection_utils) getelbow_cons() (in module tedana.selection.selection_utils) getfbounds() (in module tedana.stats) gscontrol_raw() (in module tedana.gscontrol)

I

ica_reclassify_workflow() (in module tedana.workflows) index_bibtex_identifiers() (in module tedana.bibtex)

InputHarvester (class in tedana.io) item_separator (CustomEncoder attribute) iterencode() (CustomEncoder method)

K

kappa_elbow_kundu() (in module tedana.selection.selection_utils)

key_separator (CustomEncoder attribute) kundu_tedpca() (in module tedana.selection.tedpca)

L

likely_bold_comps_ (ComponentSelector property) load_config() (in module tedana.selection.component_selector) load_data() (in module tedana.io) load_json() (in module tedana.io)

load_validate_external_regressors() (in module tedana.metrics.external) loaders (InputHarvester attribute) log_classification_counts() (in module tedana.selection.selection_utils) log_decision_tree_step() (in module tedana.selection.selection_utils)

M

make_adaptive_mask() (in module tedana.utils) make_optcom() (in module tedana.combine) manual_classify() (in module tedana.selection.selection_nodes) millisec2sec() (in module tedana.utils) minimum_image_regression() (in module tedana.gscontrol) module tedana.bibtex tedana.combine tedana.decay tedana.decomposition tedana.gscontrol tedana.io tedana.metrics tedana.metrics.collect tedana.metrics.dependence tedana.metrics.external tedana.reporting tedana.selection tedana.selection.selection_nodes tedana.selection.selection_utils tedana.selection.tedica tedana.selection.tedpca tedana.stats tedana.utils tedana.workflows

N

n_accepted_comps_ (ComponentSelector property) n_comps_ (ComponentSelector property)

n_likely_bold_comps_ (ComponentSelector property) new_nii_like() (in module tedana.io)

O

OutputGenerator (class in tedana.io)

P

pca_results() (in module tedana.reporting.static_figures) plot_adaptive_mask() (in module tedana.reporting.static_figures)

plot_rmse() (in module tedana.reporting.static_figures) plot_t2star_and_s0() (in module tedana.reporting.static_figures) prep_data_for_json() (in module tedana.io)

R

reduce_idx() (in module tedana.bibtex) reduce_references() (in module tedana.bibtex) register_input() (OutputGenerator method) registry (InputHarvester property)

RegressError rejected_comps_ (ComponentSelector property) reshape_niimg() (in module tedana.utils) rho_elbow_kundu_liberal() (in module tedana.selection.selection_utils)

S

save_file() (OutputGenerator method) save_img() (OutputGenerator method) save_json() (OutputGenerator method) save_self() (OutputGenerator method)

save_tsv() (OutputGenerator method) sec2millisec() (in module tedana.utils) select() (ComponentSelector method) selectcomps2use() (in module tedana.selection.selection_utils) split_ts() (in module tedana.io)

T

t2smap_workflow() (in module tedana.workflows) tedana.bibtex module tedana.combine module tedana.decay module tedana.decomposition module tedana.gscontrol module tedana.io module tedana.metrics module tedana.metrics.collect module tedana.metrics.dependence module tedana.metrics.external module tedana.reporting module

tedana.selection module tedana.selection.selection_nodes module tedana.selection.selection_utils module tedana.selection.tedica module tedana.selection.tedpca module tedana.stats module tedana.utils module tedana.workflows module tedana_workflow() (in module tedana.workflows) tedica() (in module tedana.decomposition) tedpca() (in module tedana.decomposition) threshold_map() (in module tedana.metrics.dependence) (in module tedana.utils) threshold_to_match() (in module tedana.metrics.dependence) to_files() (ComponentSelector method) TreeError (class in tedana.selection.component_selector)

U

unmask() (in module tedana.utils)

V

validate_extern_regress() (in module tedana.metrics.external)

validate_tree() (in module tedana.selection.component_selector)

W

write_split_ts() (in module tedana.io)

writeresults() (in module tedana.io) writeresults_echoes() (in module tedana.io)