tedana: TE Dependent ANAlysis¶
tedana package is part of the ME-ICA pipeline, performing TE-dependent
analysis of multi-echo functional magnetic resonance imaging (fMRI) data.
tedana) is a Python module for denoising
multi-echo functional magnetic resonance imaging (fMRI) data.
tedana originally came about as a part of the ME-ICA pipeline.
The ME-ICA pipeline originally performed both pre-processing and TE-dependent
analysis of multi-echo fMRI data; however,
tedana now assumes that you’re
working with data which has been previously preprocessed.
For a summary of multi-echo fMRI, which is the imaging technique
tedana builds on,
visit Multi-echo fMRI.
For a detailed procedure of how
tedana analyzes the data from multi-echo fMRI,
visit Processing pipeline details.
When using tedana, please include the following citations:
tedana Available from: https://doi.org/10.5281/zenodo.1250561
2. Kundu, P., Inati, S. J., Evans, J. W., Luh, W. M. & Bandettini, P. A. (2011). Differentiating BOLD and non-BOLD signals in fMRI time series using multi-echo EPI. NeuroImage, 60, 1759-1770.
3. Kundu, P., Brenowitz, N. D., Voon, V., Worbe, Y., Vértes, P. E., Inati, S. J., Saad, Z. S., Bandettini, P. A., & Bullmore, E. T. (2013). Integrated strategy for improving functional connectivity mapping using multiecho fMRI. Proceedings of the National Academy of Sciences, 110, 16187-16192.
Alternatively, you can automatically compile relevant citations by running your
tedana code with duecredit. For example, if you plan to run a script using
tedana (in this case,
python -m duecredit tedana_script.py
You can also learn more about why citing software is important.
tedana is licensed under GNU Lesser General Public License version 2.1.
- What is multi-echo fMRI?
- Acquiring multi-echo data
- Using tedana
- The tedana pipeline
- Outputs of tedana
- Support and communication
- Contributing to tedana
- Developer Guidelines
- The tedana roadmap
tedana.workflows: Common workflows
tedana.decay: Modeling signal decay across echoes
tedana.combine: Combining time series across echoes
tedana.decomposition: Data decomposition
tedana.metrics: Computing TE-dependence metrics
tedana.selection: Component selection
tedana.gscontrol: Global signal control
tedana.io: Reading and writing data
tedana.stats: Statistical functions
tedana.utils: Utility functions