API

tedana.model: Modeling TE-dependence

tedana.model
tedana.model.fit_decay(data, tes, mask, …) Fit voxel-wise monoexponential decay models to data
tedana.model.fit_decay_ts(data, mask, tes, …) Fit voxel- and timepoint-wise monoexponential decay models to data
tedana.model.fitmodels_direct(catd, mmix, …) Fit models directly.
tedana.model.make_optcom(data, t2s, tes, …) Optimally combine BOLD data across TEs.
tedana.model.monoexponential Functions to estimate S0 and T2* from multi-echo data.
tedana.model.fit Fit models.
tedana.model.combine Functions to optimally combine data across echoes.

tedana.decomposition: Data decomposition

tedana.decomposition
tedana.decomposition.tedpca(catd, OCcatd, …) Use principal components analysis (PCA) to identify and remove thermal noise from multi-echo data.
tedana.decomposition.tedica(n_components, …) Performs ICA on dd and returns mixing matrix
tedana.decomposition._utils Utility functions for tedana decomposition

tedana.selection: Component selection

tedana.selection
tedana.selection.selcomps(seldict, mmix, …) Labels components in mmix
tedana.selection._utils Utility functions for tedana.selection

tedana.workflows: Common workflows

tedana.workflows
tedana.workflows.tedana(data, tes[, mixm, …]) Run the “canonical” TE-Dependent ANAlysis workflow.
tedana.workflows.t2smap(data, tes[, …]) Estimate T2 and S0, and optimally combine data across TEs.

tedana.utils: Utility functions

tedana.utils
tedana.utils.io Functions to handle file input/output
tedana.utils.utils Utilities for tedana package